GgaEX7011859 @ galGal4
Exon Skipping
Gene
ENSGALG00000006060 | SCN8A
Description
sodium channel, voltage gated, type VIII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10596]
Coordinates
chrLGE22C19W28_E50C23:84141-89035:-
Coord C1 exon
chrLGE22C19W28_E50C23:88881-89035
Coord A exon
chrLGE22C19W28_E50C23:88305-88478
Coord C2 exon
chrLGE22C19W28_E50C23:84141-84263
Length
174 bp
Sequences
Splice sites
3' ss Seq
AGAATCTGGTTATTCCCCAGGCT
3' ss Score
5.33
5' ss Seq
GCTGTATGT
5' ss Score
5.1
Exon sequences
Seq C1 exon
GTTGCATGCAGCGCTGTAAGTGTTGTCAGGTCAATATTGAGGAGGGGCTGGGGAAGTCCTGGTGGACCTTGAGGAAGACGTGTTTTCTGATTGTGGAGCACAACTGGTTTGAGACTTTCATCATCTTCATGATCCTACTGAGCAGTGGAGCTCTG
Seq A exon
GCTTTTGAGGATATTTACATAGAACAGAGGAAAACCATCCGGACCATCCTGGAGTACGCAGACAAGGTCTTCACGTACATTTTCATCCTGGAGATGTTGCTGAAATGGTGCGCCTATGGATTCGTCAAGTTCTTCACCAACGCCTGGTGCTGGCTGGATTTCCTCATTGTGGCT
Seq C2 exon
GTCTCTTTAGTCAGCCTTATAGCTAATGCCCTGGGCTACTCGGAACTAGGTGCCATAAAGTCCCTTAGGACCCTAAGAGCTTTGAGGCCTTTAAGAGCGTTGTCCCGATTTGAGGGGATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006060-'27-24,'27-21,28-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=PD(20.2=84.6)
A:
PF0052026=Ion_trans=PU(17.0=67.2)
C2:
PF0052026=Ion_trans=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGCTGTAAGTGTTGTCAGG
R:
GGACAACGCTCTTAAAGGCCT
Band lengths:
251-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]