MmuEX6104178 @ mm9
Exon Skipping
Gene
ENSMUSG00000079110 | Capn3
Description
calpain 3 [Source:MGI Symbol;Acc:MGI:107437]
Coordinates
chr2:120328869-120329890:+
Coord C1 exon
chr2:120328869-120328947
Coord A exon
chr2:120329085-120329201
Coord C2 exon
chr2:120329832-120329890
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCCTGCCCCTCCAAGGCT
3' ss Score
6.16
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAAATCTTCAAGCACTATGACACAGACCATTCCGGTACCATCAATAGCTATGAGATGCGAAATGCAGTCAATGATGCAG
Seq A exon
GCTTCCATCTCAACAGCCAACTCTATGACATCATCACCATGCGCTATGCGGACAAACACATGAACATCGACTTTGACAGCTTCATCTGCTGCTTCGTCAGGCTGGAAGGGATGTTCA
Seq C2 exon
GAGCTTTTAACGCATTTGACAAGGATGGCGATGGTATCATCAAACTGAATGTACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079110-'37-38,'37-37,40-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0175117=Toprim=FE(26.0=100),PF134991=EF-hand_7=FE(27.7=100)
A:
PF0175117=Toprim=PD(14.0=35.0),PF134991=EF-hand_7=FE(41.5=100)
C2:
PF134991=EF-hand_7=FE(20.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGCACTATGACACAGACCA
R:
TCAAGTACATTCAGTTTGATGATACC
Band lengths:
130-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: