GgaEX6038015 @ galGal4
Exon Skipping
Gene
ENSGALG00000009050 | CAPN3
Description
calpain-3 [Source:RefSeq peptide;Acc:NP_001004405]
Coordinates
chr5:24959516-24960606:+
Coord C1 exon
chr5:24959516-24959594
Coord A exon
chr5:24960072-24960188
Coord C2 exon
chr5:24960548-24960606
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATTTCTGGTCCCCCTGCAGGGT
3' ss Score
10.14
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
AAAATCTTCAAGCATTACGATGCAGACCATTCAGGAACCATTAACAGCTATGAGATGCGCAATGCAGTCAAAGATGCAG
Seq A exon
GGTTTCGGCTGAACAACCAGCTCTACGACATCATCACGATGCGCTATGCTGACAAGAACATGAACATCGACTTTGACAGCTTCATCTGCTGCTTCGTGAGACTGGATGCTATGTTCA
Seq C2 exon
GGGCATTCCATGCCTTTGATAAAGATGGAGATGGAATCATAAAGCTCAACGTCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050-'27-30,'27-29,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PD(86.2=92.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATGCAGACCATTCAGGAAC
R:
CTCCAGGACGTTGAGCTTTATGA
Band lengths:
122-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]