DreEX6056037 @ danRer10
Exon Skipping
Gene
ENSDARG00000041864 | capn3a
Description
calpain 3a, (p94) [Source:ZFIN;Acc:ZDB-GENE-040912-97]
Coordinates
chr17:45355496-45358724:+
Coord C1 exon
chr17:45355496-45355574
Coord A exon
chr17:45355684-45355800
Coord C2 exon
chr17:45358666-45358724
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTGTCTTGTGTGTCACTCAGGGT
3' ss Score
8.18
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GAAATCTTTAAGCGCTATGACTTTGATCATAATGACACTATCAGCAGCTATGAGATGAGAAACGCCATCAATGACGCAG
Seq A exon
GGTTCCGTCTGAACAACCAGCTGTATGACATCATCACCATGCGCTACGCCAACGAAAGCATGAATGTCGACTTTGAGAGTTTCATCAGCTGCCTTGTGCGACTGGAGGGGATGTTCA
Seq C2 exon
GAGCATTCCAGGCCTTTGACCAATGTGGAGATGGCAGCATCAGGCTCAGTGTACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041864-'25-25,'25-23,26-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(28.3=100)
A:
PF134991=EF-hand_7=FE(40.4=100),PF144351=SUKH-4=PU(56.5=89.7)
C2:
PF134991=EF-hand_7=FE(20.2=100),PF144351=SUKH-4=FE(30.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATCTTTAAGCGCTATGACTTTGA
R:
CTCCAGTACACTGAGCCTGATG
Band lengths:
138-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]