RnoEX0016711 @ rn6
Exon Skipping
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112276611-112278022:+
Coord C1 exon
chr3:112276611-112276689
Coord A exon
chr3:112276890-112277006
Coord C2 exon
chr3:112277637-112278022
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCCTGCCCCTCCAAGGCT
3' ss Score
6.16
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAAATCTTCAAACACTATGACACTGACCATTCTGGTACCATCAATAGCTATGAGATGCGAAATGCAGTCAATGATGCAG
Seq A exon
GCTTCCATCTCAACAGCCAACTCTATGACATCATCACCATGCGCTACGCAGACAAACACATGAACATCGACTTTGACAGCTTCATCTGCTGCTTCGTCAGGCTGGAAGGGATGTTCA
Seq C2 exon
GAGCTTTTCACGCATTTGACAAGGATGGAGATGGCATCATCAAACTGAACGTACTTGAGGTAAGCGTAACACAGCACATCCTCTGCGTAGAAGCCATGGTGGAATACACGAGGCTGATGGAGGCCAGTATGCTTTTCACTACCAAGAGCCTGTTGAAGATTGTGATTCCTGGGGTGGGTGTACCATGAGAGCTCTGCCTGCCCCCACGATGCACTGCAGTGGAAGACCTCTTTTCCTAGGAAAGACCCAGGGAAAAGGTGCAGGCTGCTTGCTCCTTTGACTCCTCCCCTTCTCCTTCCCAGTGCTAGCAATTCTAAGGGACGGTGGGCACCTCTTTGCTTGCTTTTGTACTGATCTCAGAGTTTCTTCTTCCAGTGGCTGCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609-'29-29,'29-28,30-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PD(86.2=92.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAATGCAGTCAATGATGCA
R:
GGTCTTCCACTGCAGTGCATC
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]