HsaEX6074171 @ hg19
Exon Skipping
Gene
ENSG00000092529 | CAPN3
Description
calpain 3, (p94) [Source:HGNC Symbol;Acc:1480]
Coordinates
chr15:42702786-42703543:+
Coord C1 exon
chr15:42702786-42702864
Coord A exon
chr15:42703082-42703198
Coord C2 exon
chr15:42703485-42703543
Length
117 bp
Sequences
Splice sites
3' ss Seq
TAACATGGTCCCCTCCACAGGAT
3' ss Score
9.59
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAAATTTTCAAACACTATGACACAGACCAGTCCGGCACCATCAACAGCTACGAGATGCGAAATGCAGTCAACGACGCAG
Seq A exon
GATTCCACCTCAACAACCAGCTCTATGACATCATTACCATGCGGTACGCAGACAAACACATGAACATCGACTTTGACAGTTTCATCTGCTGCTTCGTTAGGCTGGAGGGCATGTTCA
Seq C2 exon
GAGCTTTTCATGCATTTGACAAGGATGGAGATGGTATCATCAAGCTCAACGTTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092529-'36-39,'36-38,37-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0175117=Toprim=FE(20.2=100),PF0003627=EF-hand_1=PD(86.2=92.6)
A:
PF0175117=Toprim=PD(13.9=35.0),PF134991=EF-hand_7=FE(41.9=100)
C2:
PF0003627=EF-hand_1=PD(84.2=84.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAACACTATGACACAGACCAGT
R:
TCCAGAACGTTGAGCTTGATGA
Band lengths:
130-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)