GgaEX6038015 @ galGal3
Exon Skipping
Gene
ENSGALG00000009050 | CAPN3
Description
NA
Coordinates
chr5:27840834-27841924:+
Coord C1 exon
chr5:27840834-27840912
Coord A exon
chr5:27841390-27841506
Coord C2 exon
chr5:27841866-27841924
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATTTCTGGTCCCCCTGCAGGGT
3' ss Score
10.14
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
AAAATCTTCAAGCATTACGATGCAGACCATTCAGGAACCATTAACAGCTATGAGATGCGCAATGCAGTCAAAGATGCAG
Seq A exon
GGTTTCGGCTGAACAACCAGCTCTACGACATCATCACGATGCGCTATGCTGACAAGAACATGAACATCGACTTTGACAGCTTCATCTGCTGCTTCGTGAGACTGGATGCTATGTTCA
Seq C2 exon
GGGCATTCCATGCCTTTGATAAAGATGGAGATGGAATCATAAAGCTCAACGTCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050-'24-22,'24-21,25-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PD(86.2=92.6)
A:
PF134051=EF-hand_6=PU(11.5=7.5)
C2:
PF134051=EF-hand_6=FE(73.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATGCAGACCATTCAGGAAC
R:
CTCCAGGACGTTGAGCTTTATGA
Band lengths:
122-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]