MmuEX6104178 @ mm10
Exon Skipping
Gene
ENSMUSG00000079110 | Capn3
Description
calpain 3 [Source:MGI Symbol;Acc:MGI:107437]
Coordinates
chr2:120503133-120504154:+
Coord C1 exon
chr2:120503133-120503211
Coord A exon
chr2:120503349-120503465
Coord C2 exon
chr2:120504096-120504154
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCCTGCCCCTCCAAGGCT
3' ss Score
6.16
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAAATCTTCAAGCACTATGACACAGACCATTCCGGTACCATCAATAGCTATGAGATGCGAAATGCAGTCAATGATGCAG
Seq A exon
GCTTCCATCTCAACAGCCAACTCTATGACATCATCACCATGCGCTATGCGGACAAACACATGAACATCGACTTTGACAGCTTCATCTGCTGCTTCGTCAGGCTGGAAGGGATGTTCA
Seq C2 exon
GAGCTTTTAACGCATTTGACAAGGATGGCGATGGTATCATCAAACTGAATGTACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079110-'50-43,'50-40,61-43=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(28.3=100)
A:
PF134991=EF-hand_7=FE(42.4=100)
C2:
PF134991=EF-hand_7=FE(20.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGCACTATGACACAGACCA
R:
TCAAGTACATTCAGTTTGATGATACC
Band lengths:
130-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types