BtaEX6052758 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008868 | CAPN3
Description
Bos taurus calpain 3, (p94) (CAPN3), mRNA. [Source:RefSeq mRNA;Acc:NM_174260]
Coordinates
chr10:37884092-37884867:+
Coord C1 exon
chr10:37884092-37884170
Coord A exon
chr10:37884379-37884495
Coord C2 exon
chr10:37884809-37884867
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCTGTGCTCTCCCCAACAGGCT
3' ss Score
11.41
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAAATTTTCAAACACTATGACACAGACCAATCTGGCACCATCAACAGCTACGAGATGCGCAATGCAGTCAAAGATGCAG
Seq A exon
GCTTCCACCTCAACAACCAGCTCTACGATATCATTACCATGCGCTATGCAGACAAGTACATGAATATTGACTTCGACAGTTTCATCTGCTGCTTTGTCAGGCTGGAGGGCATGTTCA
Seq C2 exon
GAGCTTTCAATGCATTTGACAAGGATGGGGACGGTATCATCAAACTCAATGTTCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008868-'35-35,'35-34,36-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(27.4=100)
A:
PF134991=EF-hand_7=FE(41.1=100)
C2:
PF134991=EF-hand_7=FE(20.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAACACTATGACACAGACCA
R:
CGAGAACATTGAGTTTGATGATACCG
Band lengths:
130-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]