BtaEX6093441 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009155 | SCN5A
Description
Bos taurus sodium channel, voltage-gated, type V, alpha subunit (SCN5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174458]
Coordinates
chr22:12015691-12024847:-
Coord C1 exon
chr22:12024743-12024847
Coord A exon
chr22:12023102-12023372
Coord C2 exon
chr22:12015691-12017271
Length
271 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGCCCTTCCTTTCAGAAC
3' ss Score
12.31
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
TTAGGGGGCCAGGACATCTTCATGACAGAGGAGCAGAAGAAGTACTACAACGCCATGAAGAAGCTGGGCTCCAAGAAGCCCCAGAAGCCCATCCCACGGCCCCTG
Seq A exon
AACAAGTACCAGGGCTTCATATTCGACATTGTGACCAAGCAGGCCTTCGACGTCACCATCATGTTTCTCATCTGCTTAAACATGGTGACCATGATGGTGGAGACAGACGACCAGAGCCCCGAGAAGGTCAACATCTTGGCCAAGATCAACCTGCTGTTCGTGGGCATCTTCACAGCCGAGTGTATCTTCAAGATGGTTGCCCTGCGCCACTATTACTTCACCAACAGCTGGAACATCTTCGACTTCGTGGTTGTCATCCTCTCCATCGTAG
Seq C2 exon
GCACTGTGCTCTCAGACATCATCCAGAAGTACTTCTTCTCCCCGACGCTCTTCCGCGTCATCCGCCTGGCCCGCATCGGCCGCATCCTCAGGCTGATCCGCGGGGCCAAGGGCATCCGCACGCTTCTCTTCGCCCTCATGATGTCCCTGCCCGCGCTCTTCAACATCGGGCTGCTGCTCTTCCTCGTCATGTTCATCTACTCCATCTTCGGCATGGCCAACTTCGCCTACGTCAAGTGGGAGGCTGGCATCGACGACATGTTCAACTTCCAGACCTTCGCCAACAGCATGCTGTGCCTCTTCCAGATCACCACGTCGGCGGGCTGGGATGGGCTCCTCAGCCCCATCCTCAACACGGGGCCCCCCTACTGCGACCCCAACCTGCCCAACAGCAACGGCTCCCGGGGCAACTGCGGGAGCCCTGCGGTGGGCATCCTCTTCTTCACCACCTACATCATCATCTCCTTCCTCATTGTGGTCAACATGTACATCGCCATCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009155-'29-34,'29-33,30-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.228
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.5=47.3)
C2:
PF0052026=Ion_trans=PD(79.0=40.1),PF0061222=IQ=WD(100=5.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGGGGGCCAGGACATCTTC
R:
CATGACGAGGAAGAGCAGCAG
Band lengths:
296-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]