RnoEX6038205 @ rn6
Exon Skipping
Gene
ENSRNOG00000015049 | Scn5a
Description
sodium voltage-gated channel alpha subunit 5 [Source:RGD Symbol;Acc:3637]
Coordinates
chr8:128169191-128177310:-
Coord C1 exon
chr8:128177206-128177310
Coord A exon
chr8:128175546-128175816
Coord C2 exon
chr8:128169191-128172619
Length
271 bp
Sequences
Splice sites
3' ss Seq
CCCATTACCTCTTCTTCCAGAAC
3' ss Score
9.13
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
TTAGGGGGCCAGGATATCTTCATGACGGAGGAGCAGAAGAAGTACTACAATGCCATGAAGAAGCTGGGCTCCAAGAAACCCCAGAAGCCCATCCCACGGCCCTTG
Seq A exon
AACAAGTACCAGGGTTTCATATTCGACATTGTGACCAAGCAGGCCTTCGATGTCACCATCATGTTCCTCATCTGTTTGAACATGGTGACCATGATGGTGGAGACAGATGACCAGAGCCCTGAGAAGGTCAACATCTTGGCCAAGATCAACCTGCTCTTCGTGGCCATCTTCACAGGCGAGTGTATTGTCAAGATGGCTGCCCTGCGCCACTATTACTTCACCAACAGCTGGAACATCTTCGACTTTGTGGTGGTCATCCTCTCCATTGTTG
Seq C2 exon
GCACTGTCCTCTCCGACATCATCCAGAAGTACTTCTTCTCCCCGACACTCTTCCGGGTCATCCGTCTGGCCAGGATCGGCCGCATCCTCAGGCTGATCCGCGGAGCCAAGGGGATTCGCACGCTGCTCTTCGCCCTCATGATGTCCCTGCCCGCCCTCTTCAACATCGGCCTCCTCCTCTTCCTCGTCATGTTCATCTACTCCATCTTCGGCATGGCCAACTTCGCTTACGTCAAGTGGGAGGCCGGCATCGATGACATGTTCAACTTCCAGACCTTCGCCAACAGCATGCTGTGCCTGTTCCAGATCACCACATCGGCCGGCTGGGACGGCCTCCTCAGCCCCATCCTCAACACGGGGCCTCCCTACTGCGACCCCAACCTGCCCAACAGCAACGGCTCCCGGGGGAACTGTGGGAGCCCGGCGGTGGGCATCCTCTTCTTCACCACCTACATCATCATCTCCTTCCTCATCGTGGTCAACATGTACATCGCCATCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015049-'36-39,'36-37,37-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.5=47.3)
C2:
PF0052026=Ion_trans=PD(79.0=40.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAGAAACCCCAGAAGCC
R:
TGAACATGTCATCGATGCCGG
Band lengths:
301-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]