GgaEX6018317 @ galGal4
Exon Skipping
Gene
ENSGALG00000006112 | SCN5A
Description
sodium channel, voltage gated, type V alpha subunit [Source:HGNC Symbol;Acc:HGNC:10593]
Coordinates
chr2:5606633-5613834:+
Coord C1 exon
chr2:5606633-5606737
Coord A exon
chr2:5607209-5607479
Coord C2 exon
chr2:5608818-5613834
Length
271 bp
Sequences
Splice sites
3' ss Seq
AATTCTCTTCTTTCCTCCAGAAC
3' ss Score
10.26
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
TTAGGTGGCCAGGACATCTTTATGACAGAAGAACAGAAAAAGTATTATAATGCAATGAAAAAGTTGGGTTCTAAGAAACCTCAAAAGCCAATCCCAAGACCACTG
Seq A exon
AACAAATACCAAGGTTTTATTTTTGATGTTGTCTCAAAACAAGCCTTTGATGTCTCCATCATGATTCTCATCTGCCTTAACATGGTTACCATGATGGTAGAAACGGATGATCAAAGTCAGGAAAAAGTGAACATCCTCCACAAAATCAACATGCTTTTTGTTGCCATCTTCACTGGGGAGTGCATCTTCAAAATGCTGGCACTACGACACTACTACTTCACCAATGGTTGGAACATCTTTGACTTTGTCGTTGTGATTCTGTCTATTGTAG
Seq C2 exon
GCACTGTACTTTCTGACATCATTCAGAAATACTTTTTCTCTCCCACACTCTTCAGAGTCATTCGCTTGGCTCGAATTGGCCGGATCCTAAGACTCATCCGGGGAGCCAAAGGAATTCGAACTCTCCTTTTTGCCTTAATGATGTCCCTACCTGCTCTGTTCAACATTGGCCTCTTGCTTTTTCTGGTCATGTTCATTTATGCCATTTTTGGCATGGCTAACTTTGCCTATGTTAAGAAGGAGTATGGGATTGATGACATGTTCAACTTCCAAACTTTTGCTAACAGCATGCTCTGTCTCTTCCAAATCACAACGTCAGCTGGCTGGGATGGTCTTCTCAACCCTATTTTGAACACTGGACCACCATATTGCGACCCAAACCTTCCAAATGCAAATGGTTCAAAGGGAGACTGTGGAAGTCCTGCCGTAGGGATTTTATTCTTTGTTACTTATATCATTATATCATTTCTCATCGTTGTAAACATGTATATAGCCATTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112-'31-39,'31-38,32-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.078
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.5=47.3)
C2:
PF0052026=Ion_trans=PD(79.0=40.3),PF0061222=IQ=WD(100=5.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGGTGGCCAGGACATCTTT
R:
ACCAGAAAAAGCAAGAGGCCA
Band lengths:
292-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]