MmuEX1023108 @ mm10
Exon Skipping
Gene
ENSMUSG00000032511 | Scn5a
Description
sodium channel, voltage-gated, type V, alpha [Source:MGI Symbol;Acc:MGI:98251]
Coordinates
chr9:119483408-119491565:-
Coord C1 exon
chr9:119491461-119491565
Coord A exon
chr9:119489749-119490019
Coord C2 exon
chr9:119483408-119486818
Length
271 bp
Sequences
Splice sites
3' ss Seq
CCTCTCGCCTCTTCTTCCAGAAC
3' ss Score
10.48
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
TTAGGGGGCCAGGACATCTTCATGACGGAGGAGCAGAAGAAGTACTACAATGCCATGAAGAAGCTGGGCTCCAAGAAACCCCAGAAGCCCATCCCACGGCCTCTG
Seq A exon
AACAAGTACCAGGGTTTCATATTCGACATTGTGACCAAGCAGGCCTTCGATGTTACCATCATGTTCCTCATCTGTTTAAACATGGTGACCATGATGGTAGAGACAGATGATCAGAGCCCTGAAAAAGTCAACATCTTGGCCAAGATCAACCTGCTCTTCGTGGCCATCTTCACAGGAGAGTGTATTGTCAAGATGGCTGCCCTGCGCCACTATTACTTCACCAACAGCTGGAACATCTTCGATTTCGTGGTTGTCATCCTCTCCATCGTTG
Seq C2 exon
GCACTGTCCTCTCCGACATCATCCAGAAGTACTTCTTCTCCCCAACGCTCTTCCGTGTCATCCGTCTGGCCAGGATCGGCCGCATCCTCAGGCTGATCCGAGGAGCCAAGGGGATTCGCACGTTGCTCTTCGCCCTCATGATGTCCCTGCCCGCCCTCTTCAACATCGGCCTCCTCCTCTTCCTCGTCATGTTCATCTACTCCATCTTCGGCATGGCCAACTTTGCCTACGTCAAGTGGGAGGCTGGCATCGACGACATGTTCAACTTCCAGACCTTTGCCAACAGCATGCTGTGCCTTTTCCAGATCACCACGTCGGCTGGCTGGGATGGCCTCCTCAGCCCCATCCTCAACACAGGACCCCCCTACTGTGACCCCAACCTGCCCAACAGCAATGGCTCCAGGGGGAACTGTGGGAGCCCAGCAGTGGGCATCCTCTTCTTCACCACCTACATCATCATCTCCTTCCTCATCGTGGTCAACATGTACATTGCCATCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032511-'38-33,'38-32,39-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.186
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.5=47.3)
C2:
PF0052026=Ion_trans=PD(79.0=40.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAGAAACCCCAGAAGCC
R:
TGAACATGTCGTCGATGCCAG
Band lengths:
301-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types