DreEX6029433 @ danRer10
Exon Skipping
Gene
ENSDARG00000090724 | scn12aa
Description
sodium channel, voltage gated, type XII, alpha a [Source:ZFIN;Acc:ZDB-GENE-060908-2]
Coordinates
chr2:52295271-52297266:-
Coord C1 exon
chr2:52297166-52297266
Coord A exon
chr2:52296807-52297077
Coord C2 exon
chr2:52295271-52296496
Length
271 bp
Sequences
Splice sites
3' ss Seq
ACAAATACATTTCCATCTAGAAT
3' ss Score
4.99
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGGCCAAGACATATTCATGACCGAAGAGCAGAAAAAGTACTACAACGCAATGAAGAAACTTGGATCTAAAAAGCCACAGAAGCCAATTCCAAGACCAATG
Seq A exon
AATATTCTACAAGGATTCTTCTTCGACTTGGTGTCCAAGCAAGCCTTTGATATAACCATTATGATGCTCATTATCCTCAATATGATAACCATGATGGTTGAGACTGATGAACAATCTGCTCGCATGGAGACCATCCTCAATAACATCAACTTGGCCTTCATTGTCATCTTCACTACTGAATGCCTCATCAAGATTTTTGCCCTCCGCTGTTATTTCTTCACCATTAGTTGGAACATATTTGATTTTGTAGTCGTCATTCTGTCCATCGTTG
Seq C2 exon
GAATTGTCCTGGCGGATATAATTGAAAAGTACTTTGTCTCCCCAACTCTTTTTCGAGTCATCCGGTTGGCAAGAATAGGACGAGTTCTTCGACTGATACGAGCAGCTAAGGGAATAAGGACTTTACTTTTTGCCTTAATGATGTCATTACCAGCATTGTTCAACATCGGTCTCCTACTGTTTCTGGTCATGTTCATCTATGCCATTTTTGGCATGGCAAACTTCGCTTATGTGAAGAAGCAGGGTGGGATTGATGACATGTTCAACTTTGAGACCTTCGGGAACAGCATGATCTGCCTTTTCCAGATCACCACATCGGCCGGTTGGAATAACCTGCTGGATCCTATCCTGAACAACTCTCCGGAAGAGTGTAGCTCCAGTTTTGCGAACACCGGAACAAATACTAAGGGCAACTGTGGTCACCCCTCAGTAGGGATCACTTTCTTTGTCAGCTACATCATCATTTCCTTCTTGATCGTCGTCAACATGTACATCGCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090724-'28-26,'28-25,29-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.159
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.4=47.3)
C2:
PF0052026=Ion_trans=PD(79.1=40.8),PF0061222=IQ=WD(100=5.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCACAGAAGCCAATTCCA
R:
AACATGTCATCAATCCCACCCTG
Band lengths:
292-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]