GgaEX7011855 @ galGal4
Exon Skipping
Gene
ENSGALG00000006060 | SCN8A
Description
sodium channel, voltage gated, type VIII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10596]
Coordinates
chrLGE22C19W28_E50C23:92358-95133:-
Coord C1 exon
chrLGE22C19W28_E50C23:94998-95133
Coord A exon
chrLGE22C19W28_E50C23:93086-93324
Coord C2 exon
chrLGE22C19W28_E50C23:92358-92531
Length
239 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTTTTGTAACTGTAGAGC
3' ss Score
7
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGTACGACTGAAATTGAAATTAAGAAGAAACCTGGTGGGTCTCTCTTGGTCTCGATGGATCAGGTGAACGCCTCCTATGGAAGGAAGGATCGTACCAACAGCGTGATGACCGGCTTGACCAACACCCTCGTTGAGG
Seq A exon
AGCTGGAGGAGTCCCAGAGGAAGTGTCCCCCATGCTGGTACAAATTTGCCAACACATTCTTGATCTGGGAATGCCACCCCTACTGGATCAAGCTGAAGGAGATAGTGAACTTAATCGTCATGGATCCCTTTGTTGACCTGGCCATCACCATCTGCATTGTGCTCAACACTCTGTTCATGGCAATGGAGCACCATCCTATGACCCCAGAGTTTGAACACGTGCTCTCCGTAGGAAATCTG
Seq C2 exon
GTTTTCACGGGAATTTTCACAGCAGAAATGTTCCTGAAGCTCATCGCCATGGATCCCTACTATTATTTCCAGGAAGGCTGGAACATCTTTGATGGATTCATCGTCTCCCTCAGTTTAATGGAGCTGAGTCTGGCGAATGTGGAGGGGCTCTCTGTGCTGCGATCTTTCCGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006060-'19-16,'19-15,20-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PD(16.0=78.3)
A:
PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(30.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATTAAGAAGAAACCTGGTGGG
R:
ATCGGAAAGATCGCAGCACAG
Band lengths:
294-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]