RnoEX6034134 @ rn6
Exon Skipping
Gene
ENSRNOG00000005309 | Scn8a
Description
sodium voltage-gated channel alpha subunit 8 [Source:RGD Symbol;Acc:3638]
Coordinates
chr7:142645216-142653394:+
Coord C1 exon
chr7:142645216-142645219
Coord A exon
chr7:142650184-142650422
Coord C2 exon
chr7:142653221-142653394
Length
239 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTTTGCTCACTCCAGAGC
3' ss Score
7.97
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GAAG
Seq A exon
AGCTGGAAGAGTCTCAGAGAAAGTGCCCACCGTGCTGGTATAAGTTTGCCAACACTTTCCTCATCTGGGAGTGTCACCCCTACTGGATAAAACTGAAGGAGATCGTGAACTTAATCGTCATGGACCCTTTTGTAGACTTAGCCATCACCATCTGCATCGTTCTGAATACGCTATTTATGGCAATGGAGCACCATCCCATGACACCACAGTTCGAACACGTCTTGGCCGTAGGAAATCTG
Seq C2 exon
GTGTTCACCGGGATCTTCACGGCGGAAATGTTTCTGAAGCTCATAGCCATGGACCCCTACTATTATTTCCAAGAAGGCTGGAACATTTTTGACGGATTTATTGTCTCCCTCAGTTTAATGGAGCTGAGTCTCGCAGATGTGGAGGGGCTCTCAGTGCTGCGGTCTTTCCGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005309-'37-35,'37-32,38-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=FE(0.4=100)
A:
PF119333=DUF3451=PD(6.5=20.0),PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(30.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]