BtaEX0008070 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004778 | CDC42BPA
Description
Bos taurus CDC42 binding protein kinase alpha (DMPK-like) (CDC42BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_001099729]
Coordinates
chr8:87084567-87098505:-
Coord C1 exon
chr8:87098405-87098505
Coord A exon
chr8:87096099-87096315
Coord C2 exon
chr8:87084567-87084664
Length
217 bp
Sequences
Splice sites
3' ss Seq
TATTCCTTACATTGTTCTAGGTC
3' ss Score
9.35
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
AGTCTTGCTTTTCCTTCAGGGATGGAGCGTTTTCTGTCAGTTCAGTCTGGCCCTCGGATTTTGCTCCTGCGAAGAGAAAGGAAATGCCTCGTATGTTTAAG
Seq A exon
GTCACAGCTTCCCAGCTCTCAGCACCTAGTAATAGATATTCAATCCCAATCTTAGCAGATAGCGAGAATAAGAAGAGTGAGTGGGTGGGCGTGCTGAGTGAATTGCACAAGATACTGAGAAAAAGTCATTCCAGAGACCGGTCAATCTATGTTCTGAAAGAGGCTTATGACAGCGATCTACCCCTGATCAAAACCACCCAGACAGCTGCAATCATAG
Seq C2 exon
GTTACAATGCCCCATATCTCTCAGTGTACAGTGAAAATGCAGTGGACATCTTTGATGTGAACACCATGGACTGGATCCAGACCATCCCCCTCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004778_MULTIEX1-1/5=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGCTTTTCCTTCAGGGATGG
R:
TTCTTGAGGGGGATGGTCTGG
Band lengths:
196-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development