GgaEX7011851 @ galGal4
Exon Skipping
Gene
ENSGALG00000006060 | SCN8A
Description
sodium channel, voltage gated, type VIII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10596]
Coordinates
chrLGE22C19W28_E50C23:98080-99367:-
Coord C1 exon
chrLGE22C19W28_E50C23:99226-99367
Coord A exon
chrLGE22C19W28_E50C23:98558-98764
Coord C2 exon
chrLGE22C19W28_E50C23:98080-98367
Length
207 bp
Sequences
Splice sites
3' ss Seq
TGCCATTCTCTTTCCTCCAGACC
3' ss Score
10.95
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TCAATGTCCAGAGGGTTACACATGCATGAAAGCAGGACGGAACCCAAACTACGGTTACACGAGCTTTGACACTTTCAGCTGGGCTTTCCTGGCTCTGTTTCGCCTTATGACTCAGGACTTTTGGGAAAACTTGTATCAATTA
Seq A exon
ACCTTACGAGCAGCTGGAAAAACCTACATGATCTTCTTTGTCCTGGTGATCTTCGTGGGCTCGTTCTATCTGGTCAACCTGATTCTGGCTGTGGTGGCCATGGCTTACGAAGAGCAGAACCAGGCTACGTTGGAGGAGGCAGAGCAGAAAGAGGCCGAATTTAAGGCCATGTTAGAACAGTTGAAAAAGCAGCAGGAGGAGGCACAG
Seq C2 exon
GCTGCTGCCATGGTCACTTCTGCAGGGACGGTCTCTGAGGATGCTGTGGAAGATGATGGTGGTGGGAGGATGTCTCGGAGCTCATCAGAGATCTCTAAACTGAGTTCCAAGAGTGCCAAAGAGCGCCGTAACCGGAGGAAGAAGCGGAAGGACAAAGAGCTGTCGGAAGGGGAGGAGAAGGGCGACAACGAGAAAGTGTTCAAGTCTGAATCAGAGGATGGCATGAGGAGAAAAGCCTTCAGGCTGCCAGATAACAGGATAGGAAGAAAGTTTTCCATCATGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006060-'14-12,'14-11,15-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.072 C2=0.812
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(18.7=100)
A:
PF0052026=Ion_trans=PD(12.4=44.9)
C2:
PF119333=DUF3451=PU(29.8=69.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACGGAACCCAAACTACG
R:
ACTTTCTCGTTGTCGCCCTTC
Band lengths:
307-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]