RnoEX0078603 @ rn6
Exon Skipping
Gene
ENSRNOG00000005309 | Scn8a
Description
sodium voltage-gated channel alpha subunit 8 [Source:RGD Symbol;Acc:3638]
Coordinates
chr7:142610370-142613615:+
Coord C1 exon
chr7:142610370-142610511
Coord A exon
chr7:142611538-142611744
Coord C2 exon
chr7:142613322-142613615
Length
207 bp
Sequences
Splice sites
3' ss Seq
ACTTGGCCTTCATCTTTCAGACC
3' ss Score
10.55
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCAATGCCCAGAGGGATTCCAGTGCATGAAAGCAGGAAGGAACCCCAACTACGGTTACACCAGCTTTGACACCTTCAGCTGGGCCTTCTTGGCATTATTCCGCCTTATGACCCAGGACTATTGGGAGAACTTATACCAGCTG
Seq A exon
ACCTTACGAGCCGCTGGGAAAACGTACATGATCTTCTTTGTCTTGGTCATCTTCGTGGGTTCTTTCTATCTGGTGAACTTGATCTTGGCTGTGGTGGCCATGGCTTATGAGGAACAGAACCAGGCAACACTGGAGGAGGCAGAGCAAAAAGAGGCCGAGTTCAAGGCAATGCTGGAGCAACTCAAGAAGCAGCAGGAGGAGGCACAG
Seq C2 exon
GCTGCTGCAATGGCCACCTCAGCGGGCACTGTCTCGGAAGACGCCATTGAAGAAGAAGGGGAAGATGGGGTAGGCTCTCCGAGGAGCTCATCTGAACTGTCTAAACTCAGTTCCAAGAGCGCGAAGGAGCGGCGGAACCGACGGAAGAAGAGGAAGCAGAAGGAGCTCTCTGAAGGCGAGGAGAAAGGGGACCCAGAGAAGGTGTTTAAGTCAGAGTCGGAAGACGGTATGAGAAGGAAGGCCTTCCGGCTGCCAGACAACAGGATAGGGAGGAAGTTTTCCATCATGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005309-'20-17,'20-16,21-17
Average complexity
S
Mappability confidence:
75%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.072 C2=0.857
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(18.7=100),PF057587=Ycf1=FE(16.8=100)
A:
PF0052026=Ion_trans=PD(12.4=44.9),PF057587=Ycf1=FE(24.4=100),PF0043013=ATP-synt_B=PU(72.1=89.9)
C2:
PF057587=Ycf1=PD(30.8=87.8),PF0043013=ATP-synt_B=PD(25.6=22.4),PF119333=DUF3451=PU(35.1=68.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCAACTACGGTTACACCA
R:
ACCTTCTCTGGGTCCCCTTTC
Band lengths:
304-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]