HsaEX0015665 @ hg19
Exon Skipping
Gene
ENSG00000130779 | CLIP1
Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:10461]
Coordinates
chr12:122839662-122848654:-
Coord C1 exon
chr12:122848530-122848654
Coord A exon
chr12:122845506-122845728
Coord C2 exon
chr12:122839662-122839859
Length
223 bp
Sequences
Splice sites
3' ss Seq
GTTCTTATTGTTCTCTAAAGGTA
3' ss Score
8.27
5' ss Seq
CTAGTAAGG
5' ss Score
5.17
Exon sequences
Seq C1 exon
GTTGGTGGCACTAAGGCTGGTGTAGTCCGGTTTCTTGGGGAGACCGACTTTGCCAAGGGGGAGTGGTGTGGCGTGGAGTTAGATGAGCCACTTGGGAAGAATGATGGCGCTGTTGCTGGAACAAG
Seq A exon
GTATTTTCAGTGTCAACCCAAATATGGCTTGTTCGCTCCTGTCCACAAAGTTACCAAGATTGGCTTCCCTTCCACTACACCAGCCAAAGCCAAGGCCAACGCAGTGAGGCGAGTGATGGCGACCACGTCCGCCAGCCTGAAGCGCAGCCCTTCTGCCTCTTCCCTCAGCTCCATGAGCTCAGTGGCCTCCTCTGTGAGCAGCAGGCCCAGTCGGACAGGACTA
Seq C2 exon
TTGACTGAAACCTCCTCCCGTTACGCCAGGAAGATCTCCGGTACCACTGCCCTCCAGGAGGCCCTGAAGGAGAAGCAGCAGCACATTGAGCAGCTGCTGGCGGAACGGGATCTGGAGAGGGCGGAGGTGGCCAAGGCCACGAGCCACGTGGGGGAGATAGAGCAGGAGCTAGCTCTGGCCCGGGACGGACATGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130779-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.490 C2=0.629
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=FE(62.1=100)
A:
PF0130220=CAP_GLY=PD(27.3=24.0),PF058526=DUF848=PU(29.2=44.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTGGCACTAAGGCTGG
R:
CTCCTGCTCTATCTCCCCCAC
Band lengths:
293-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)