MmuEX6020816 @ mm9
Exon Skipping
Gene
ENSMUSG00000049550 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:MGI Symbol;Acc:MGI:1928401]
Coordinates
chr5:124092428-124097974:-
Coord C1 exon
chr5:124097850-124097974
Coord A exon
chr5:124096092-124096314
Coord C2 exon
chr5:124092428-124092625
Length
223 bp
Sequences
Splice sites
3' ss Seq
CCTCTTCCTGCTCTCTGAAGGTA
3' ss Score
9.52
5' ss Seq
CTAGTAAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
GTTGGTGGCACTAAGGCTGGCGTAGTCCGCTTTCTTGGCGAGACCGACTTTGCCAAGGGGGAGTGGTGTGGTGTGGAGTTAGACGAGCCTTTGGGGAAGAACGATGGTGCTGTGGCCGGAACAAG
Seq A exon
GTATTTTCAGTGTCAACCCAAATATGGATTGTTCGCTCCTGTCCACAAAGTGACAAAGATTGGCTTCCCGTCTACTACCCCAGCCAAAGCCAAAGCCGCCGCTGTGAGGCGAGTGATGGCCGCCACGCCCGCCAGCCTGAAGCGAAGCCCTTCTGCCTCCTCCCTCAGCTCCATGAGCTCCGTGGCCTCCTCTGTGAGCAGCAAACCCAGCCGGACAGGACTA
Seq C2 exon
TTGACTGAAACCTCCTCCCGCTACGCCCGCAAGATCTCGGGCACCACTGCCCTCCAGGAGGCGCTGAAGGAGAAGCAGCAGCACATTGAGCAGCTGCTGGCTGAGCGGGACCTGGAGCGGGCCGAGGTGGCCAAGGCTACCAGCCACGTGGGGGAAATAGAGCAGGAGCTAGCCCTGGCCCGAGATGGGCATGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049550-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.449 C2=0.493
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=PU(38.7=92.3)
A:
PF0130220=CAP_GLY=PD(27.3=24.0),PF041569=IncA=PU(18.7=38.7)
C2:
PF041569=IncA=FE(41.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTGGCACTAAGGCTGG
R:
TCCTGCTCTATTTCCCCCACG
Band lengths:
292-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: