BtaEX6072471 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016779 | CLIP1
Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
Coordinates
chr17:55291944-55297417:+
Coord C1 exon
chr17:55291944-55292068
Coord A exon
chr17:55293292-55293514
Coord C2 exon
chr17:55297220-55297417
Length
223 bp
Sequences
Splice sites
3' ss Seq
TTAATTGTTGTCCCCTCAAGGTA
3' ss Score
8.04
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTTGGTGGCACGAAGGCCGGTGTAGTCCGGTTTCTTGGGGAGACAGACTTCGCCAAGGGGGAGTGGTGTGGCGTGGAGTTGGATGAGCCTCTTGGGAAGAACGACGGGGCTGTTGCTGGAACAAG
Seq A exon
GTATTTTCAGTGTCAACCCAAATATGGCCTGTTTGCTCCGGTCCACAAAGTCACCAAGATTGGCTTCCCCTCCACCACGCCAGCCAAAGCCAAGGCCGCTGCGGTGAGGCGAGTGATGGCGACCACGCCCGCCAGCATGAAGCGCAGCCCGTCCGCCTCCTCTCTCAGCTCCATGAGCTCCGTGGCCTCCTCTGTGAGCAGCAAGCCCAGCCGGACAGGACTG
Seq C2 exon
TTGACCGAAACCTCCTCCCGTTACGCCAGGAAGATCTCCGGCACCACCGCCCTCCAGGAGGCCCTGAAGGAGAAGCAGCAGCACATTGAGCAGCTGCTGGCCGAACGGGATCTAGAGAGGGCGGAGGTGGCCAAGGCCACGAGCCACGTGGGGGAGATAGAGCAGGAGCTCGCCCTGGCCCGGGACGGACACGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016779-'11-7,'11-4,12-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.560 C2=0.579
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=FE(62.1=100)
A:
PF0130220=CAP_GLY=PD(27.3=24.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTGGCACGAAGGCC
R:
CTCCTGCTCTATCTCCCCCAC
Band lengths:
293-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]