DreEX6014508 @ danRer10
Exon Skipping
Gene
ENSDARG00000078722 | clip1a
Description
CAP-GLY domain containing linker protein 1a [Source:ZFIN;Acc:ZDB-GENE-060526-282]
Coordinates
chr5:66556078-66558932:-
Coord C1 exon
chr5:66558808-66558932
Coord A exon
chr5:66558391-66558619
Coord C2 exon
chr5:66556078-66556275
Length
229 bp
Sequences
Splice sites
3' ss Seq
ATGCATTTGTTTATCTTCAGGTA
3' ss Score
9.35
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTTGCTGGCTCAAAAGCTGGCGTGGTGCGTTTCTTAGGGGAAACTGATTTTGCCAAGGGTGAGTGGTGTGGAGTTGAGCTGGATGAGCCCTTGGGGAAGAACGATGGAGCTGTGGCTGGAACCAG
Seq A exon
GTATTTCCAGTGTCAGCCCAAGTATGGTCTCTTTGCACCAGTGCACAAGGTGACCCGTATAGGTTTTCCCTCCACTACCCCAGCAAAGGCAAAAACCACTGTGCGGAAGACGACCGCCACCACCGCCGCCACTCCGTCAGCACTGAAGCGCAGCCCGAGTGCCTCCTCCATCAGCTCCATGAGCTCTGTAGCCTCTTCTGCTAGTTGCAAGCCAAGCCGTACAGGACTG
Seq C2 exon
CTGACAGAGACGTCCACGAGGTATTCGAGGAAGATCTCGGGAACTACAGCGCTTCAGGAGGCCTTGAAGGAGAAACAGCAGCACATCGAGCAGCTCCTGGCAGAGCGGGACCTGGAGAGAGCAGAGGTTGCCAAGGCAACAAACCATGTGGGCGAAGTGGAGCAGGAGCTTACATTACTGAGAGAAGGCCAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078722-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.597 C2=0.636
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=FE(62.1=100)
A:
PF0130220=CAP_GLY=PD(27.3=23.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGCGTTTCTTAGGGGAA
R:
GCTCCTGGCCTTCTCTCAGTA
Band lengths:
300-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]