GgaEX1015743 @ galGal3
Exon Skipping
Gene
ENSGALG00000004467 | CLIP1_CHICK
Description
NA
Coordinates
chr15:5903509-5907115:-
Coord C1 exon
chr15:5906991-5907115
Coord A exon
chr15:5905729-5905945
Coord C2 exon
chr15:5903509-5903706
Length
217 bp
Sequences
Splice sites
3' ss Seq
GTTTGCTTTATCTTTTAAAGATA
3' ss Score
7.95
5' ss Seq
CTAGTAAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
GTGGGTGGAACAAAAGCTGGAGTTGTGCGTTTCTTGGGAGAAACTGACTTTGCTAAAGGAGAATGGTGTGGGGTAGAGCTGGATGAACCTCTGGGAAAGAATGATGGAGCTGTTGCTGGAACAAG
Seq A exon
ATACTTTCAGTGTCAGCCAAGATACGGTTTGTTTGCTCCGGTCCACAAAGTTACAAAGATTGGATTCCCATCGACTACCCCGGCAAAAGCGAAGACAACTGTGCGAAAAGTGGTTGCGACTCCCGCAGCCCTGAAACGTAGCCCGAGTGCATCTTCCCTGAGCTCTCTCAGTTCTGTGGCATCTTCAGTAAGCAGCAAGCCGAGCCGTACAGGACTA
Seq C2 exon
TTGACAGAAACATCCTCCCGGTATGCAAGAAAGATTTCTGGTACCACAGCCCTGCAGGAGGCACTGAAGGAGAAACAGCAACATATTGAACAGCTCCTGGCAGAAAGGGACCTGGAGAGGGCAGAAGTTGCAAAAGCAACCAGTCACGTGGGGGAAATAGAGCAGGAATTAGCACTTGTTCGAGATGGACACGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467-'6-6,'6-4,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.274 C2=0.375
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=FE(62.1=100)
A:
PF0130220=CAP_GLY=PD(27.3=24.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTGGAACAAAAGCTGGA
R:
TCCTGCTCTATTTCCCCCACG
Band lengths:
292-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]