MmuEX6020816 @ mm10
Exon Skipping
Gene
ENSMUSG00000049550 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:MGI Symbol;Acc:MGI:1928401]
Coordinates
chr5:123642419-123647965:-
Coord C1 exon
chr5:123647841-123647965
Coord A exon
chr5:123646113-123646305
Coord C2 exon
chr5:123642419-123642616
Length
193 bp
Sequences
Splice sites
3' ss Seq
CCTCTTCCTGCTCTCTGAAGGTA
3' ss Score
9.52
5' ss Seq
TCTGTGAGC
5' ss Score
3.27
Exon sequences
Seq C1 exon
GTTGGTGGCACTAAGGCTGGCGTAGTCCGCTTTCTTGGCGAGACCGACTTTGCCAAGGGGGAGTGGTGTGGTGTGGAGTTAGACGAGCCTTTGGGGAAGAACGATGGTGCTGTGGCCGGAACAAG
Seq A exon
GTATTTTCAGTGTCAACCCAAATATGGATTGTTCGCTCCTGTCCACAAAGTGACAAAGATTGGCTTCCCGTCTACTACCCCAGCCAAAGCCAAAGCCGCCGCTGTGAGGCGAGTGATGGCCGCCACGCCCGCCAGCCTGAAGCGAAGCCCTTCTGCCTCCTCCCTCAGCTCCATGAGCTCCGTGGCCTCCTCT
Seq C2 exon
TTGACTGAAACCTCCTCCCGCTACGCCCGCAAGATCTCGGGCACCACTGCCCTCCAGGAGGCGCTGAAGGAGAAGCAGCAGCACATTGAGCAGCTGCTGGCTGAGCGGGACCTGGAGCGGGCCGAGGTGGCCAAGGCTACCAGCCACGTGGGGGAAATAGAGCAGGAGCTAGCCCTGGCCCGAGATGGGCATGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049550-'25-16,'25-15,26-16
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.448 C2=0.484
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=PU(38.7=92.3)
A:
PF0130220=CAP_GLY=PD(27.3=24.0),PF041569=IncA=PU(18.7=38.7)
C2:
PF041569=IncA=FE(41.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTGGCGAGACCGACTTTG
R:
CTCTATTTCCCCCACGTGGCT
Band lengths:
256-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types