RnoEX0021784 @ rn6
Exon Skipping
Gene
ENSRNOG00000001247 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:RGD Symbol;Acc:67404]
Coordinates
chr12:38383542-38388888:+
Coord C1 exon
chr12:38383542-38383666
Coord A exon
chr12:38385100-38385322
Coord C2 exon
chr12:38388691-38388888
Length
223 bp
Sequences
Splice sites
3' ss Seq
CCTCTTACTGTTCTCTAAAGGTA
3' ss Score
8.58
5' ss Seq
CTAGTAAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
GTCGGTGGCACGAAGGCTGGCGTGGTCCGGTTTCTTGGAGAGACTGACTTCGCCAAGGGGGAGTGGTGTGGTGTGGAATTGGACGAACCTTTGGGGAAGAACGACGGTGCTGTTGCTGGAACAAG
Seq A exon
GTATTTTCAATGTCAACCCAAGTACGGATTGTTCGCTCCCGTCCACAAAGTGACAAAGATTGGCTTCCCTTCTACCACCCCAGCCAAAGCCAAAGCCGCTGCTGTGAGGCGAGTGATGGCCACCACGCCCGCCAGCCTGAAGCGAAGCCCTTCTGCCTCCTCCCTCAGCTCCATGAGCTCTGTGGCCTCCTCTGTGAGCAGCAAGCCCAGCCGGACAGGACTA
Seq C2 exon
TTGACTGAAACCTCTTCCCGCTACGCCCGCAAGATCTCGGGCACCACTGCCCTCCAGGAGGCGCTGAAGGAGAAGCAGCAGCACATTGAGCAGCTGCTGGCTGAGCGGGACCTGGAGCGGGCCGAGGTGGCCAAGGCTACCAGCCACGTGGGGGAAATAGAGCAGGAGCTAGCCCTGGCCCGAGATGGGCATGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001247-'15-11,'15-8,17-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.378 C2=0.527
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=FE(62.1=100)
A:
PF0130220=CAP_GLY=PD(27.3=24.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCGGTTTCTTGGAGAGA
R:
CTGGTCATGCCCATCTCGG
Band lengths:
301-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]