GgaEX1044839 @ galGal4
Exon Skipping
Gene
ENSGALG00000007881 | PNPLA6
Description
patatin-like phospholipase domain containing 6 [Source:HGNC Symbol;Acc:HGNC:16268]
Coordinates
AADN03027100.1:4100-5562:-
Coord C1 exon
AADN03027100.1:5493-5562
Coord A exon
AADN03027100.1:4499-4615
Coord C2 exon
AADN03027100.1:4100-4216
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATTCCTCTCCCTCCGGCAGGCA
3' ss Score
9.57
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GACCTTTGGCTTCCTTACTTCAACGTCACAACAGACATCACGGCCTCAGCCATGCGGGTGCACACGGATG
Seq A exon
GCAGTCTTTGGCGTTACATCCGAGCCAGTGCCTCCTATACCCCCTACCTGCCTCCGCTCTGCGACCCCAAGGACAGCCACTGCCTCGTGGACGGCTGCTATGTTAACAATGTCCCAG
Seq C2 exon
GCTCGCTCTGGCGGTACGTGCGAGCCAGCATGACCCTATCTGGGTACCTGCCACCCCTCTGCGACCCCAAGGACGGCAACTTGCTGATGGACGGGGGTTACATCAACAACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007881_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(14.1=100)
A:
PF0173417=Patatin=FE(23.9=100),PF0173417=Patatin=PU(4.3=5.0)
C2:
PF0173417=Patatin=PD(0.1=0.0),PF0173417=Patatin=FE(84.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTTGGCTTCCTTACTTCA
R:
TGGCAGGTTGTTGATGTAACCC
Band lengths:
186-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]