GgaEX1044840 @ galGal4
Exon Skipping
Gene
ENSGALG00000007881 | PNPLA6
Description
patatin-like phospholipase domain containing 6 [Source:HGNC Symbol;Acc:HGNC:16268]
Coordinates
AADN03027100.1:2432-5562:-
Coord C1 exon
AADN03027100.1:5493-5562
Coord A exon
AADN03027100.1:4100-4216
Coord C2 exon
AADN03027100.1:2432-2580
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATTGTTCCCCGCCGGTGCAGGCT
3' ss Score
6.56
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GACCTTTGGCTTCCTTACTTCAACGTCACAACAGACATCACGGCCTCAGCCATGCGGGTGCACACGGATG
Seq A exon
GCTCGCTCTGGCGGTACGTGCGAGCCAGCATGACCCTATCTGGGTACCTGCCACCCCTCTGCGACCCCAAGGACGGCAACTTGCTGATGGACGGGGGTTACATCAACAACCTGCCAG
Seq C2 exon
CTGACATCGCCCGCAACATGGGTGCCAAGACGGTGATTGCCATCGACGTGGGCAGCCAGGACGAGACGGACCTGTGCAACTACGGGGACAGCCTGTCGGGCTGGTGGCTGCTCTGGAAGCGCCTCAACCCTTGGGCTGAAAAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007881_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(14.1=100)
A:
PF0173417=Patatin=PD(0.1=0.0),PF0173417=Patatin=FE(84.8=100)
C2:
PF0173417=Patatin=PD(8.7=8.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTTGGCTTCCTTACTTCA
R:
TTGACTTTTTCAGCCCAAGGGT
Band lengths:
218-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]